Index

_

__init__() (emgfit.model.CompositeEMGModel method) (emgfit.model.EMGModel method) (emgfit.model.EMGModelResult method) (emgfit.spectrum.peak method) (emgfit.spectrum.spectrum method) _add_peak_markers() (emgfit.spectrum.spectrum method) _buildmodel() (in module emgfit.model) _calc_m_ion() (emgfit.spectrum.spectrum method) _calc_mu_emg() (in module emgfit.fit_models) _check_par_values() (in module emgfit.emg_funcs) _enforce_shared_shape_pars() (in module emgfit.fit_models) _eval_MC_peakshape_errors() (emgfit.spectrum.spectrum method) _eval_peakshape_errors() (emgfit.spectrum.spectrum method) _get_MCMC_par_samples() (emgfit.spectrum.spectrum method) _get_state() (emgfit.model.CompositeEMGModel method) (emgfit.model.EMGModel method) _h_m_i() (in module emgfit.emg_funcs) _h_m_i_prec() (in module emgfit.emg_funcs) _h_m_i_rvs() (in module emgfit.sample) _h_p_i() (in module emgfit.emg_funcs)

_h_p_i_prec() (in module emgfit.emg_funcs) _h_p_i_rvs() (in module emgfit.sample) _likelihood_ratio_test() (in module emgfit.hypothesis_tests) _make_all_args() (emgfit.model.CompositeEMGModel method) _override_residual() (emgfit.model.EMGModel method) _parametric_bootstrap() (emgfit.spectrum.spectrum method) _parse_params() (emgfit.model.CompositeEMGModel method) _plot_df() (emgfit.spectrum.spectrum static method) _reprstring() (emgfit.model.CompositeEMGModel method) (emgfit.model.EMGModel method) _reset_all_fit_props() (emgfit.spectrum.spectrum method) _reset_shape_calib_props() (emgfit.spectrum.spectrum method) _set_state() (emgfit.model.CompositeEMGModel method) (emgfit.model.EMGModel method) _show_blinded_report() (emgfit.spectrum.spectrum method) _smooth() (emgfit.spectrum.spectrum static method) _strip_pref() (in module emgfit.spectrum) _strip_prefs() (in module emgfit.spectrum) _update_calibrant_props() (emgfit.spectrum.spectrum method) _update_peak_indeces() (emgfit.spectrum.spectrum method) _update_peak_props() (emgfit.spectrum.spectrum method)

A

abs_z (emgfit.spectrum.peak property) add_peak() (emgfit.spectrum.spectrum method)

add_peak_comment() (emgfit.spectrum.spectrum method) add_spectrum_comment() (emgfit.spectrum.spectrum method) assign_species() (emgfit.spectrum.spectrum method)

C

calc_FWHM_emg() (emgfit.spectrum.spectrum method) calc_mu_emg() (emgfit.spectrum.spectrum method) calc_peak_area() (emgfit.spectrum.spectrum method) calc_sigma_emg() (emgfit.spectrum.spectrum method) coerce_arraylike() (in module emgfit.model)

comp_model() (emgfit.spectrum.spectrum method) components (emgfit.model.CompositeEMGModel property) CompositeEMGModel (class in emgfit.model) ConstantModel (class in emgfit.fit_models) cost_func (emgfit.model.EMGModelResult property) create_default_init_pars() (in module emgfit.fit_models)

D

detect_peaks() (emgfit.spectrum.spectrum method)

determine_A_stat_emg() (emgfit.spectrum.spectrum method) determine_peak_shape() (emgfit.spectrum.spectrum method)

E

emg01() (in module emgfit.fit_models) emg10() (in module emgfit.fit_models) emg11() (in module emgfit.fit_models) emg12() (in module emgfit.fit_models) emg21() (in module emgfit.fit_models) emg22() (in module emgfit.fit_models) emg23() (in module emgfit.fit_models) emg32() (in module emgfit.fit_models) emg33() (in module emgfit.fit_models) emgfit.ame_funcs module emgfit.config module emgfit.emg_funcs module

emgfit.fit_models module emgfit.hypothesis_tests module emgfit.model module emgfit.sample module emgfit.spectrum module EMGModel (class in emgfit.model) EMGModelResult (class in emgfit.model) erfcxinv() (in module emgfit.fit_models) eval() (emgfit.model.CompositeEMGModel method) eval_components() (emgfit.model.CompositeEMGModel method)

F

fit() (emgfit.model.EMGModel method) (emgfit.model.EMGModelResult method) fit_calibrant() (emgfit.spectrum.spectrum method)

fit_model (emgfit.model.EMGModelResult property) fit_peaks() (emgfit.spectrum.spectrum method) fit_simulated_spectra() (in module emgfit.sample)

G

Gaussian() (in module emgfit.fit_models) Gaussian_rvs() (in module emgfit.sample) get_AME_values() (in module emgfit.ame_funcs) get_charge_state() (in module emgfit.ame_funcs)

get_El_from_Z() (in module emgfit.ame_funcs) get_errors_from_resampling() (emgfit.spectrum.spectrum method) get_MC_peakshape_errors() (emgfit.spectrum.spectrum method) get_mu0() (in module emgfit.fit_models) guess() (emgfit.fit_models.ConstantModel method)

H

h_emg() (in module emgfit.emg_funcs) h_emg_rvs() (in module emgfit.sample) h_m_emg() (in module emgfit.emg_funcs)

h_m_emg_rvs() (in module emgfit.sample) h_p_emg() (in module emgfit.emg_funcs) h_p_emg_rvs() (in module emgfit.sample)

L

load() (emgfit.model.EMGModelResult method) load_model() (in module emgfit.model)

load_modelresult() (in module emgfit.model) load_peak_shape_cal() (emgfit.spectrum.spectrum method) loads() (emgfit.model.EMGModelResult method)

M

mdata_AME() (in module emgfit.ame_funcs) module emgfit.ame_funcs emgfit.config emgfit.emg_funcs emgfit.fit_models emgfit.hypothesis_tests emgfit.model emgfit.sample emgfit.spectrum

mu_emg() (in module emgfit.emg_funcs)

P

par_hint_args (emgfit.model.EMGModelResult property) param_names (emgfit.model.CompositeEMGModel property) peak (class in emgfit.spectrum) peakfit() (emgfit.spectrum.spectrum method)

plot() (emgfit.spectrum.spectrum method) plot_fit() (emgfit.spectrum.spectrum method) plot_fit_zoom() (emgfit.spectrum.spectrum method) post_fit() (emgfit.model.CompositeEMGModel method) print_properties() (emgfit.spectrum.peak method)

R

remove_peak() (emgfit.spectrum.spectrum method) remove_peaks() (emgfit.spectrum.spectrum method)

resample_events() (in module emgfit.sample) run_GV_likelihood_ratio_test() (in module emgfit.hypothesis_tests) run_MC_likelihood_ratio_test() (in module emgfit.hypothesis_tests)

S

save_fit_trace() (emgfit.spectrum.spectrum method) save_model() (in module emgfit.model) save_modelresult() (in module emgfit.model) save_peak_shape_cal() (emgfit.spectrum.spectrum method) save_results() (emgfit.spectrum.spectrum method) scl_init_pars() (in module emgfit.fit_models) set_blinded_peaks() (emgfit.spectrum.spectrum method)

set_lit_values() (emgfit.spectrum.spectrum method) show_peak_properties() (emgfit.spectrum.spectrum method) sigma_emg() (in module emgfit.emg_funcs) simulate_events() (in module emgfit.sample) simulate_spectrum() (in module emgfit.sample) spectrum (class in emgfit.spectrum) splitparticle() (in module emgfit.ame_funcs) splitspecies() (in module emgfit.ame_funcs)

U

update_lit_values() (emgfit.spectrum.peak method)

V

vary_baseline (emgfit.model.EMGModelResult property)

vary_shape (emgfit.model.EMGModelResult property)

X

x (emgfit.model.EMGModelResult property)

x_fit_cen (emgfit.model.EMGModelResult property) x_fit_range (emgfit.model.EMGModelResult property)

Y

y (emgfit.model.EMGModelResult property)

y_err (emgfit.model.EMGModelResult property)